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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5319766_5322728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5319766 - 5322728
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATAT
Flanking Amino Acid:
KHSISGQRFLNMSENDIQKF
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
49.3
0.02
1.8
69.37
40.9

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026