About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5322792_5326010_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5322792 - 5326010
Intron Length:
3219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTTTTTTGACA
Flanking Amino Acid:
PDELAEYFKTLKYKDCEKVV
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
85.3
0.79
0.9
83.2
31.9
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
72.4
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026