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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_533317_535930_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
533317 - 535930
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGTTAAGTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83
0.74
0.7
78
30.8
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
46.1
-0.2
2.3
69.57
41.1

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151