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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5398081_5398531_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5398081 - 5398531
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAAGT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AAAGCAATACCT
Flanking Amino Acid:
GITIVPFYTKSVWTTETVCK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
68.3
42.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.5
0.8
0.7
81.4
30.6
Minor 5ss
33.9
-1.8
3.3
49.5
46.3
Minor BPS
42.2
-0.5
2.1
58.97
43.3

Associated Gene:

Gene:
KCNMB1
Ensembl Gene ID:
ENSAPLG00000011791
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012268
5397282 - 5400319
3038