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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_54127_54334_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54127 - 54334
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
TGGCTCCCATTT
Flanking Amino Acid:
HPKCFVCSTCRKPFPIGDKV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
57.6
0.19
1
53
33.7
Major PPT
70.3
0.46
0.9
63.8
36.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.3
-0.6
1.9
54.84
41.1

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029729
28564 - 68885
40322
ENSAPLT00000021842
28564 - 68885
40322
ENSAPLT00000013019
28337 - 69087
40751
ENSAPLT00000042079
28564 - 68885
40322