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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5461828_5540708_F

Intron Information:

Intron Rank:
150081
Intron Class:
major
Intron Phase:
Intron Coordinates:
5461828 - 5540708
Intron Length:
78881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
AGTTACATGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
65
0.37
1.3
75
40
Major PPT
81.5
0.71
0.8
76.4
31.6
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49.3
-0
1.8
62.98
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030689
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017351
5461569 - 5541934
80366