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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5569987_5579358_R

Intron Information:

Intron Rank:
137704
Intron Class:
major
Intron Phase:
Intron Coordinates:
5569987 - 5579358
Intron Length:
9372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TACCTTTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.8
0.65
0.9
73.4
37.1
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
50.1
-0.1
1.3
51.46
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021594
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047554
5569291 - 5579639
10349