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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5765839_5783193_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5765839 - 5783193
Intron Length:
17355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATCAAAATAAAT
Flanking Amino Acid:
PRCTGAVWQADKIEDELEMT
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
42
-0.5
2
60.32
42

Associated Gene:

Gene:
KCNIP1
Ensembl Gene ID:
ENSAPLG00000011343
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029542
5765026 - 5798582
33557