About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5796088_5796657_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5796088 - 5796657
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTACT
5'SS Class:
major
3'SS Sequence:
TCTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
PRQHVEVFFQKMDKNKDGVV
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.5
37.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
37.4
-1.4
3
52.9
43.6
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
KCNIP1
Ensembl Gene ID:
ENSAPLG00000011343
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029542
5765026 - 5798582
33557
ENSAPLT00000029223
5588502 - 5798582
210081
ENSAPLT00000011823
5710348 - 5798582
88235