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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5830555_5831385_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5830555 - 5831385
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATTGCAACT
Flanking Amino Acid:
FSNGTILYALRITTTVACNM
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.8
0.87
0.6
83.5
24.9
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
48.7
-0
2.2
76.2
40.8

Associated Gene:

Gene:
GABRP
Ensembl Gene ID:
ENSAPLG00000011181
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011646
5825047 - 5835325
10279