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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5869274_5873328_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5869274 - 5873328
Intron Length:
4055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTTTCTAACA
Flanking Amino Acid:
MALRGQSLAELEVLCN
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
66
40.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.2
0.77
0.8
81
29.5
Minor 5ss
27
-2.6
3.1
33
42
Minor BPS
64.4
0.45
1.6
75.11
36.7

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011073
5869256 - 6029774
160519
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519