About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5875367_5876628_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5875367 - 5876628
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGCTTCTTTACA
Flanking Amino Acid:
PLPVEQRIDIRNYILNYVAS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
71.9
39.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.4
0.8
0.8
79.6
32.5
Minor 5ss
37.9
-1.4
2.7
48.5
40.3
Minor BPS
64.3
0.44
1.6
71.54
40.3

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519
ENSAPLT00000011073
5869256 - 6029774
160519