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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5880872_5883623_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5880872 - 5883623
Intron Length:
2752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
GTGACCTGACAA
Flanking Amino Acid:
LSELTQEMNLLLAKPLTIQD
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.2
42.7
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
44.8
-0.6
2.9
59.4
40.2
Minor BPS
45.9
-0.3
1.8
55.42
42.7

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519