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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5885978_5886433_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5885978 - 5886433
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTATTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
HSLPPMLSQLALSCLVQFAS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.7
0.82
0.7
85.8
28.4
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011073
5869256 - 6029774
160519
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519