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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5886554_5886819_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5886554 - 5886819
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTATC
5'SS Class:
major
3'SS Sequence:
TCTTCAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GCTTCTTCAAAT
Flanking Amino Acid:
GVKQILENPQGLSDPGTYHE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.9
36.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
70.3
0.46
0.9
68.2
36.7
Minor 5ss
56.8
0.23
2.1
71.6
38.3
Minor BPS
59.7
0.38
1.7
74.28
42.3

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011073
5869256 - 6029774
160519
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519