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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5886967_5888563_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5886967 - 5888563
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
GTTTTCTTATAG
Flanking Amino Acid:
IANFTITSLQHWEFAPNSVH
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
85.4
0.8
0.7
80.8
31.3
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
57.7
0.1
1.8
65.12
42.5

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519
ENSAPLT00000011073
5869256 - 6029774
160519