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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5888737_5892439_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5888737 - 5892439
Intron Length:
3703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
TTGTCTCTATTC
Flanking Amino Acid:
SRLDCVPVVIRDGLEDPLDD
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.1
40.4
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
78.8
0.65
0.9
69.9
40.3
Minor 5ss
46.8
-0.3
2.9
64.1
47.4
Minor BPS
50.7
0
1.9
66.47
39.9

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519
ENSAPLT00000011073
5869256 - 6029774
160519