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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5892634_5896698_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5892634 - 5896698
Intron Length:
4065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
RNPLEITVQEGRLAWLVYFV
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.2
0.39
1
66
39.5
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519
ENSAPLT00000011073
5869256 - 6029774
160519