Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5896805_5898309_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5896805 - 5898309

Intron Length:

1505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCATTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TTTTCCTGAAAA

Flanking Amino Acid:

HDAMDGELSCRVFQLISLMD

Intron Amino Acid Position:

525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

85.6

31.2

Major BPS

72.5

0.56

1.2

39.9

Major PPT

68.5

0.42

1.1

67.8

36.8

Minor 5ss

39.1

-1.2

3.4

45.5

Minor BPS

76.2

0.82

1.5

86.18

31.9

Associated Gene:

Gene:

RANBP17

Ensembl Gene ID:

ENSAPLG00000010566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046189

5869256 - 6029774

160519

ENSAPLT00000022928

5869256 - 6029774

160519

ENSAPLT00000011073

5869256 - 6029774

160519