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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5962122_5968235_F

Intron Information:

Intron Rank:
16
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
5962122 - 5968235
Intron Length:
6114

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TGG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACACCTGCTAC|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACA
Flanking Amino Acid:
TLQFLNDLSVGYSLLKKLVK
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34.7
-0.9
3.4
53.2
46.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
34.6
-0.8
3.1
40.2
39.6
Minor 5ss
96.6
1.55
0.8
90.9
28.7
Minor BPS
92.9
1.34
0.7
94.2
22.5

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011073
5869256 - 6029774
160519
ENSAPLT00000046189
5869256 - 6029774
160519