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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6006791_6022708_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6006791 - 6022708
Intron Length:
15918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACGTAAACT
Flanking Amino Acid:
MQQNPEVLQQMMSILMNTII
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.2
33.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.9
0.79
0.8
82
34.7
Minor 5ss
35.8
-1.6
3
49.7
46.6
Minor BPS
49.9
0.07
2.4
76.23
46.3

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519
ENSAPLT00000011073
5869256 - 6029774
160519