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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6026707_6029677_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6026707 - 6029677
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATGAAAT
Flanking Amino Acid:
EQNLLVKNRDRFTQNMSVFR
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.8
76.1
37.8
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
49.6
0.05
2
75.74
39.6

Associated Gene:

Gene:
RANBP17
Ensembl Gene ID:
ENSAPLG00000010566
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011073
5869256 - 6029774
160519
ENSAPLT00000046189
5869256 - 6029774
160519
ENSAPLT00000022928
5869256 - 6029774
160519