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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6042060_6050805_F

Intron Information:

Intron Rank:
129632
Intron Class:
major
Intron Phase:
Intron Coordinates:
6042060 - 6050805
Intron Length:
8746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCCCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.1
0.68
0.8
77.9
35.5
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
51.1
0.12
2
74.4
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019766
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039268
6041396 - 6050966
9571