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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6044594_6045502_F

Intron Information:

Intron Rank:
129634
Intron Class:
major
Intron Phase:
Intron Coordinates:
6044594 - 6045502
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCCTATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
47.4
-0.1
1.7
62.81
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019766
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047087
6041396 - 6045985
4590