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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6044594_6058175_F

Intron Information:

Intron Rank:
129630
Intron Class:
major
Intron Phase:
Intron Coordinates:
6044594 - 6058175
Intron Length:
13582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTATCAATGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
51.7
0.05
1.9
69.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019766
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027800
6044191 - 6058178
13988