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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6080962_6081895_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6080962 - 6081895
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CAATACCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AATTTTCTAACA
Flanking Amino Acid:
KPSTPASKTKTPDSKKDKSL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.5
0.48
0.9
66.4
39.8
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
61.1
0.35
1.6
71.31
34.2

Associated Gene:

Gene:
FGF18
Ensembl Gene ID:
ENSAPLG00000010108
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010525
6079705 - 6163118
83414