About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6112354_6119094_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6112354 - 6119094
Intron Length:
6741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TTCTCCCCCACC
Flanking Amino Acid:
GTRINRRKLDMFVAEENVDF
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.7
33.8
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
80.1
0.68
0.8
76.7
32
Minor 5ss
37.4
-1.4
2.6
43.1
36.9
Minor BPS
47.8
-0.1
2.3
67.5
44

Associated Gene:

Gene:
FGF18
Ensembl Gene ID:
ENSAPLG00000010108
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010536
6087291 - 6163118
75828