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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_61218_62157_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61218 - 62157
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGGAC
U12 Branch Point Sequence:
TCTCCCTCTCCC
Flanking Amino Acid:
SIGSPNRVICAKVDNEILNY
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
71.6
40.2
Major BPS
40.1
-0.6
1.2
28.7
32
Major PPT
72.3
0.5
0.7
65.2
30.6
Minor 5ss
37
-1.5
2.6
39.4
38.9
Minor BPS
38
-0.9
3.6
60.58
44.5

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042079
28564 - 68885
40322
ENSAPLT00000029729
28564 - 68885
40322
ENSAPLT00000021842
28564 - 68885
40322
ENSAPLT00000013019
28337 - 69087
40751