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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6219753_6221092_R

Intron Information:

Intron Rank:
130043
Intron Class:
major
Intron Phase:
Intron Coordinates:
6219753 - 6221092
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCATCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTCTCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
67.1
0.38
0.8
61
29
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
49.3
-0
1.9
67.51
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017174
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027109
6213836 - 6226166
12331
ENSAPLT00000025375
6214399 - 6229140
14742