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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6226288_6228589_R

Intron Information:

Intron Rank:
130045
Intron Class:
major
Intron Phase:
Intron Coordinates:
6226288 - 6228589
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
76.3
37.8
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
56.3
0.2
1.7
68.66
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017174
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025375
6214399 - 6229140
14742