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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6337823_6384988_R

Intron Information:

Intron Rank:
139990
Intron Class:
major
Intron Phase:
Intron Coordinates:
6337823 - 6384988
Intron Length:
47166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTACCCTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
82.2
0.72
0.8
76.6
32
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
50.8
-0.1
1.8
60
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022703
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030941
6336840 - 6385419
48580