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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6507107_6508141_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6507107 - 6508141
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTACTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTACTTTATA
Flanking Amino Acid:
NKRIVSGAYDGKIKVWDLQA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
79
37.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.8
0.7
80.9
30.8
Minor 5ss
44.6
-0.6
3.1
58.2
46.4
Minor BPS
66.2
0.5
1.8
80.4
35

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035511
6505294 - 6570715
65422
ENSAPLT00000034511
6501517 - 6554783
53267
ENSAPLT00000048285
6505294 - 6559450
54157
ENSAPLT00000028187
6501517 - 6570715
69199
ENSAPLT00000038741
6505294 - 6570715
65422
ENSAPLT00000010400
6505294 - 6570715
65422
ENSAPLT00000035913
6501517 - 6570715
69199