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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6508253_6508886_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6508253 - 6508886
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGAACCTGAAGC
Flanking Amino Acid:
VVSGSSDNTIRLWDIECGAC
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
74.7
0.56
1
79.3
33.1
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
51.3
0.02
1.8
62.25
42.3

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034511
6501517 - 6554783
53267
ENSAPLT00000048285
6505294 - 6559450
54157
ENSAPLT00000028187
6501517 - 6570715
69199
ENSAPLT00000038741
6505294 - 6570715
65422
ENSAPLT00000010400
6505294 - 6570715
65422
ENSAPLT00000035913
6501517 - 6570715
69199
ENSAPLT00000035511
6505294 - 6570715
65422