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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6510428_6511428_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6510428 - 6511428
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CCTTCCTCCATT
Flanking Amino Acid:
IVTGSSDSTVRVWDVNTGEV
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
52.7
0.16
2
71.5
46

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034511
6501517 - 6554783
53267
ENSAPLT00000048285
6505294 - 6559450
54157
ENSAPLT00000028187
6501517 - 6570715
69199
ENSAPLT00000038741
6505294 - 6570715
65422
ENSAPLT00000010400
6505294 - 6570715
65422
ENSAPLT00000035913
6501517 - 6570715
69199
ENSAPLT00000035511
6505294 - 6570715
65422