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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6535678_6536783_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6535678 - 6536783
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTAAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAAAC
Flanking Amino Acid:
ESPKKNTLWQISNGTSSVIV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
65
0.34
1
60.1
38.6
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
48.2
-0.1
2
64.09
41.6

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035511
6505294 - 6570715
65422
ENSAPLT00000034511
6501517 - 6554783
53267
ENSAPLT00000048285
6505294 - 6559450
54157
ENSAPLT00000028187
6501517 - 6570715
69199
ENSAPLT00000038741
6505294 - 6570715
65422
ENSAPLT00000010400
6505294 - 6570715
65422
ENSAPLT00000035913
6501517 - 6570715
69199