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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6536847_6554681_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6536847 - 6554681
Intron Length:
17835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTTTC
5'SS Class:
major
3'SS Sequence:
CCATTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAATAGTAATT
Flanking Amino Acid:
QSMPSVRCLQNTSVMEDQNE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
69.4
38.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.8
72.7
37.3
Minor 5ss
43.8
-0.7
3
61.2
43.7
Minor BPS
42.9
-0.4
2.1
58.16
38.5

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035511
6505294 - 6570715
65422
ENSAPLT00000034511
6501517 - 6554783
53267
ENSAPLT00000010400
6505294 - 6570715
65422