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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6536847_6559380_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6536847 - 6559380
Intron Length:
22534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAATAGTAATT
Flanking Amino Acid:
MNCVRYRHQNTSVMEDQNE
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.8
72.7
37.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
42.9
-0.4
2.1
58.16
38.5

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048285
6505294 - 6559450
54157