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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6536847_6562883_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6536847 - 6562883
Intron Length:
26037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAATAGTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.8
72.7
37.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
42.9
-0.4
2.1
58.16
38.5

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028187
6501517 - 6570715
69199