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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6536847_6570596_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6536847 - 6570596
Intron Length:
33750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAATAGTAATT
Flanking Amino Acid:
VIEDKTIELMNTSVMEDQNE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.8
72.7
37.3
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
42.9
-0.4
2.1
58.16
38.5

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035913
6501517 - 6570715
69199