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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6554784_6570596_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6554784 - 6570596
Intron Length:
15813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCACCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTTTGTCACCC
Flanking Amino Acid:
VIEDKTIELMCSVPRSLWLG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
74.3
0.55
0.9
66.6
35.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
47.4
-0.2
2.4
69.77
42

Associated Gene:

Gene:
FBXW11
Ensembl Gene ID:
ENSAPLG00000009963
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010400
6505294 - 6570715
65422