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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6583924_6585294_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6583924 - 6585294
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTTACCA
Flanking Amino Acid:
QFVKGFGGIGGILRYRVDFQ
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83
0.74
0.9
78
40.1
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
64.8
0.46
1.6
74.03
38.5

Associated Gene:

Gene:
ETF1
Ensembl Gene ID:
ENSAPLG00000009740
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010157
6583841 - 6594925
11085