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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6588130_6588656_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6588130 - 6588656
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TGTCACAGACTT
Flanking Amino Acid:
ELSQSDMFDQRLQSKVLKLV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
80.8
0.69
0.8
80.8
31.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
41.4
-0.5
2
61.6
41.7

Associated Gene:

Gene:
ETF1
Ensembl Gene ID:
ENSAPLG00000009740
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010157
6583841 - 6594925
11085