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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6589882_6593813_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6589882 - 6593813
Intron Length:
3932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGCTGACAACT
Flanking Amino Acid:
YLCDNKFHTEALTALLSDDS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
39.9
-0.6
2.3
57.95
44.8

Associated Gene:

Gene:
ETF1
Ensembl Gene ID:
ENSAPLG00000009740
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010157
6583841 - 6594925
11085