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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6611130_6611794_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6611130 - 6611794
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAAGAA
U12 Branch Point Sequence:
CTCTCTTTCACA
Flanking Amino Acid:
LKLFEMAYKKMASEREGSGS
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
48.4
-0.1
1.1
44.7
36.9
Major PPT
83.4
0.75
0.7
78.7
27
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
62.1
0.37
1.8
70.26
42.8

Associated Gene:

Gene:
HSPA9
Ensembl Gene ID:
ENSAPLG00000009263
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009695
6610397 - 6627943
17547