Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6617570_6618403_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6617570 - 6618403

Intron Length:

834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTTGG

5'SS Class:

major

3'SS Sequence:

TTCTCCTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

GCACCCTGAGCT

Flanking Amino Acid:

DNKLLGQFTLVGIPPAPRGV

Intron Amino Acid Position:

445

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

62.4

44.7

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

82.5

0.73

0.7

80.9

24.3

Minor 5ss

38.3

-1.3

3.1

45.9

44.6

Minor BPS

49.4

0.04

1.7

64.66

44.8

Associated Gene:

Gene:

HSPA9

Ensembl Gene ID:

ENSAPLG00000009263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009695

6610397 - 6627943

17547