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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6618509_6619261_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6618509 - 6619261
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
AGTCCACTAACT
Flanking Amino Acid:
NTTIPTKKSQVFSTAADGQT
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
70
40.8
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
33
-1.9
3.6
46.7
48.6
Minor BPS
53.1
0.18
2
75.58
39.9

Associated Gene:

Gene:
HSPA9
Ensembl Gene ID:
ENSAPLG00000009263
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009695
6610397 - 6627943
17547