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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6622118_6623879_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6622118 - 6623879
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGCTTTTCACA
Flanking Amino Acid:
AKCELSSSVQTDINLPYLTM
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.8
0.74
0.9
77.3
37
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
49.5
-0
1.7
60.6
39.7

Associated Gene:

Gene:
HSPA9
Ensembl Gene ID:
ENSAPLG00000009263
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009695
6610397 - 6627943
17547