Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6624777_6625513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6624777 - 6625513

Intron Length:

737

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGCTCG

5'SS Class:

major

3'SS Sequence:

TCTGTTCATGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TTGTCTAGAAAG

Flanking Amino Acid:

AYGLDKSEDKIIAVYDLGGG

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

65.3

41.4

Major BPS

84.8

0.86

85.7

34.9

Major PPT

74.6

0.55

0.9

70.3

35.4

Minor 5ss

46.6

-0.3

2.8

61.6

Minor BPS

47.9

-0.2

1.9

58.6

42.8

Associated Gene:

Gene:

HSPA9

Ensembl Gene ID:

ENSAPLG00000009263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009695

6610397 - 6627943

17547