Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6625780_6626990_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6625780 - 6626990

Intron Length:

1211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTGGA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTAAAAATAACT

Flanking Amino Acid:

FVLMKMKETAENYLGHSAKN

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.2

64.5

41.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

92.5

0.96

0.6

85.6

29.1

Minor 5ss

-2.6

3.1

32.5

42.2

Minor BPS

45.7

-0.2

66.66

42.5

Associated Gene:

Gene:

HSPA9

Ensembl Gene ID:

ENSAPLG00000009263

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009695

6610397 - 6627943

17547