About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_6627116_6627625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6627116 - 6627625
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
GGAGCTGTTACA
Flanking Amino Acid:
RFDDSEVKKDIKNVPFKIVR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
41.9
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
87.7
0.85
0.7
80.3
31.8
Minor 5ss
34.5
-1.8
3.3
44.8
43.4
Minor BPS
41.4
-0.6
2.2
49.02
41.5

Associated Gene:

Gene:
HSPA9
Ensembl Gene ID:
ENSAPLG00000009263
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009695
6610397 - 6627943
17547